minerva and minepy: a C engine for the MINE suite and its R, Python and MATLAB wrappers
نویسندگان
چکیده
UNLABELLED We introduce a novel implementation in ANSI C of the MINE family of algorithms for computing maximal information-based measures of dependence between two variables in large datasets, with the aim of a low memory footprint and ease of integration within bioinformatics pipelines. We provide the libraries minerva (with the R interface) and minepy for Python, MATLAB, Octave and C++. The C solution reduces the large memory requirement of the original Java implementation, has good upscaling properties and offers a native parallelization for the R interface. Low memory requirements are demonstrated on the MINE benchmarks as well as on large ( = 1340) microarray and Illumina GAII RNA-seq transcriptomics datasets. AVAILABILITY AND IMPLEMENTATION Source code and binaries are freely available for download under GPL3 licence at http://minepy.sourceforge.net for minepy and through the CRAN repository http://cran.r-project.org for the R package minerva. All software is multiplatform (MS Windows, Linux and OSX).
منابع مشابه
Intake Manifold Flow Assessment on a 3-cylinder Natural Aspirated Downsized Engine Using CFD and GT-SUITE
In this paper the intake manifold as the most effective part on engine’s volumetrice efficiency is in vestigated in detail with emphesizing on flow behavior and characterestics. The eight different design have been prepared and imported to CFD software. Five objective functions for investigation of flow have been connsidered and applied in TOPSIS with different weights. Mass flow rate,massfl...
متن کاملBiodiesel production from tomato seed and its engine emission test and simulation using Artificial Neural Network
In this study, tomato seed oil was used to produce Biodiesel fuel. To reduce the percentage of free fatty acids, the oil was reacted at a temperature of 40, 50, and 60°C with a mixture of sulphuric acid and the industrial methanol with different molar ratios of oil. The best conversion efficiency was achieved at 60°C and a molar ratio of 1:9. In the transesterification step, biodiesel was produ...
متن کاملA Study on Performance of Solid Oxide Fuel Cell-Stirling Engine Cycle Combined System- Part I: SOFC Simulation by Programming in Matlab and Modeling in Hysys
In recent years, using new methods in utilization of energy resources has become necessary due to environmental pollution and restriction of energy resources. The hybrid system presented in this article produced power with SOFC and Stirling engine. The purpose is to analyze a 50 kW Solid Oxide Fuel Cell that could produce enough thermal energy for a 10 kW Stirling engine working in the hybrid s...
متن کاملA Study on Fuel Consumption Reduction Using 48-V Mild Hybrid Technology
Due to the air pollution crisis and increase in greenhouse gases, emission standards are getting tougher gradually. In the other hand reducing the consumption of nonrenewable resources is one of the main goals of the automotive industries in the world. Using electric propulsion along with internal combustion engine is one of the answers. Different designs of Hybrid Electric Vehicles (HEV) have ...
متن کاملMass Properties Identification of a Rigid Body Using Modal Analysis
In performing vibration analysis of the car engine on the engine support, it is necessary to know the mass properties of the engine including mass, position of the center of mass and mass inertia moments. Because the car engine has a relatively complex geometric shape and is composed of different components with different densities, determining its mass properties faces many challenges. There a...
متن کاملذخیره در منابع من
با ذخیره ی این منبع در منابع من، دسترسی به آن را برای استفاده های بعدی آسان تر کنید
برای دانلود متن کامل این مقاله و بیش از 32 میلیون مقاله دیگر ابتدا ثبت نام کنید
ثبت ناماگر عضو سایت هستید لطفا وارد حساب کاربری خود شوید
ورودعنوان ژورنال:
- Bioinformatics
دوره 29 3 شماره
صفحات -
تاریخ انتشار 2013